The SAC is currently reviewing the contradiction -- it appears that the allowance was added to 13.5.B without removing the contradictory part of 13.5.C. The clarification explained the effect of the new language in 13.5.B.
Contradiction or no, it still would not be necessary to draw a distinction between bushings that are bonded to stock parts and bushings that are not, if only bushings that were integral to the shock could be changed.
As for the Miata upper bushings: on the 1st generation cars it might not be legal to change the bushing, if it is not possible to do so without modifying the mounting plate. I seem to recall that the 1st gen upper shock mount had a single molded-in piece of rubber held in place by sheet metal above and below it. I suppose if one were to remove that rubber and pour in some urethane, that would be permissible.
The 2nd generation Miata has a more conventional 2-donuts-sandwiched-around-the-plate upper mount, and the donuts can be replaced without modifying the plate.
John S.
S2000 #42as